* Package: sci-biology/wise-2.4.0_alpha-r1:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/09f9fee92ff35e960de7ebde603dd8ac798a1f85 (Fri Dec 13 20:18:30 UTC 2024) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.66.1 (python 3.12.8-final-0, default/linux/amd64/23.0/split-usr, gcc-15, glibc-2.40-r7, 6.1.114-gentoo-dist x86_64) ================================================================= System uname: Linux-6.1.114-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-glibc2.40 KiB Mem: 263449476 total, 64173692 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Fri, 13 Dec 2024 20:18:29 +0000 sh bash 5.2_p37 ld GNU ld (Gentoo 2.43 p3) 2.43.1 app-misc/pax-utils: 1.3.8::gentoo app-shells/bash: 5.2_p37::gentoo dev-build/autoconf: 2.72-r1::gentoo dev-build/automake: 1.17-r1::gentoo dev-build/cmake: 3.31.2::gentoo dev-build/libtool: 2.5.4::gentoo dev-build/make: 4.4.1-r100::gentoo dev-build/meson: 1.6.0-r1::gentoo dev-lang/perl: 5.40.0-r1::gentoo dev-lang/python: 3.10.16_p1::gentoo, 3.11.11_p1::gentoo, 3.12.8::gentoo, 3.13.1::gentoo sys-apps/baselayout: 2.17::gentoo sys-apps/openrc: 0.55.1::gentoo sys-apps/sandbox: 2.40::gentoo sys-devel/binutils: 2.43-r2::gentoo sys-devel/binutils-config: 5.5.2::gentoo sys-devel/gcc: 15.0.0_pre20241208-r1::gentoo sys-devel/gcc-config: 2.12.1::gentoo sys-kernel/linux-headers: 6.12::gentoo (virtual/os-headers) sys-libs/glibc: 2.40-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: True sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: sync-rsync-verify-max-age: 3 sync-rsync-verify-metamanifest: yes ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* BSD" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive" DISTDIR="/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/distdir" EMERGE_DEFAULT_OPTS="--complete-graph y --with-bdeps=y -1 -k -b --backtrack=100" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0" LEX="flex" MAKEOPTS="-j32" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl amd64 bzip2 cet crypt debug elogind gdbm iconv ipv6 jumbo-build libtirpc multilib native-symlinks ncurses nls openmp pam pcre readline seccomp split-usr ssl test-rust unicode verify-sig xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## 2024-12-13T22:58:33 >>> sec-keys/openpgp-keys-antoniodiazdiaz-20220406 2024-12-13T22:58:34 >>> sec-keys/openpgp-keys-icu-20241110 2024-12-13T22:58:35 >>> sci-libs/mpfi-1.5.4_p20220401 2024-12-13T22:58:35 >>> sci-biology/hmmer-2.3.2-r6 2024-12-13T22:58:36 >>> app-text/libpaper-2.1.3 2024-12-13T22:58:37 >>> app-shells/tcsh-6.24.13 2024-12-13T22:58:37 >>> media-gfx/potrace-1.16-r1 2024-12-13T22:58:38 >>> dev-libs/zziplib-0.13.78 2024-12-13T22:58:39 >>> x11-misc/xdg-user-dirs-0.18 2024-12-13T22:58:39 >>> app-text/docbook-xml-dtd-4.3-r2 2024-12-13T22:58:40 >>> dev-libs/kpathsea-6.4.0_p20240311 2024-12-13T22:58:41 >>> virtual/perl-Test-Simple-1.302.199 2024-12-13T22:58:41 >>> dev-perl/MRO-Compat-0.150.0 2024-12-13T22:58:42 >>> dev-perl/XString-0.5.0 2024-12-13T22:58:43 >>> dev-perl/PadWalker-2.500.0 2024-12-13T22:58:44 >>> dev-perl/Class-Data-Inheritable-0.100.0 2024-12-13T22:58:44 >>> virtual/perl-Time-HiRes-1.977.700 2024-12-13T22:58:45 >>> virtual/perl-Storable-3.320.0-r1 2024-12-13T22:58:46 >>> virtual/perl-CPAN-Meta-Requirements-2.143.0 2024-12-13T22:58:46 >>> virtual/perl-Sys-Syslog-0.360.0-r4 2024-12-13T22:58:47 >>> dev-perl/Package-Stash-XS-0.300.0 2024-12-13T22:58:48 >>> dev-perl/Variable-Magic-0.640.0 2024-12-13T22:58:48 >>> dev-perl/Role-Tiny-2.2.4 2024-12-13T22:58:50 >>> dev-perl/Ref-Util-XS-0.117.0 2024-12-13T22:58:51 >>> dev-perl/File-Which-1.270.0 2024-12-13T22:58:49 >>> dev-perl/Perl-Tidy-20240903.0.0 2024-12-13T22:58:51 >>> dev-perl/Sub-Name-0.270.0 2024-12-13T22:58:52 >>> dev-perl/Sub-Install-0.929.0 2024-12-13T22:58:53 >>> dev-perl/ExtUtils-HasCompiler-0.25.0 2024-12-13T22:58:53 >>> dev-perl/Devel-StackTrace-2.40.0 2024-12-13T22:58:54 >>> dev-perl/Sub-Quote-2.6.8 2024-12-13T22:58:55 >>> dev-perl/Module-Runtime-0.16.0-r1 2024-12-13T23:00:27 >>> sys-apps/ed-1.20.2 2024-12-13T23:00:27 >>> dev-libs/icu-76.1-r1 2024-12-13T23:00:28 >>> dev-libs/ptexenc-1.4.6_p20240311 2024-12-13T23:00:29 >>> app-text/dvipsk-2024.03.11_p70015 2024-12-13T23:00:30 >>> app-text/ps2pkm-1.8_p20240311 2024-12-13T23:00:30 >>> dev-perl/Devel-Caller-2.70.0 2024-12-13T23:00:31 >>> dev-perl/Class-XSAccessor-1.190.0-r3 2024-12-13T23:00:32 >>> dev-perl/Try-Tiny-0.320.0 2024-12-13T23:00:32 >>> dev-perl/File-HomeDir-1.6.0 2024-12-13T23:00:33 >>> dev-perl/CPAN-Meta-Check-0.18.0 2024-12-13T23:00:34 >>> dev-perl/Ref-Util-0.204.0 2024-12-13T23:00:34 >>> dev-perl/Exception-Class-1.450.0 2024-12-13T23:00:35 >>> dev-perl/Dist-CheckConflicts-0.110.0-r1 2024-12-13T23:00:36 >>> dev-perl/Data-OptList-0.114.0 2024-12-13T23:01:17 >>> dev-perl/Devel-LexAlias-0.50.0-r1 2024-12-13T23:01:18 >>> dev-perl/Test-Fatal-0.17.0 2024-12-13T23:01:18 >>> dev-perl/Module-Implementation-0.90.0-r1 2024-12-13T23:01:19 >>> dev-perl/Sub-Exporter-0.991.0 2024-12-13T23:01:20 >>> media-libs/harfbuzz-10.1.0 2024-12-13T23:01:36 >>> dev-perl/Eval-Closure-0.140.0-r1 2024-12-13T23:01:37 >>> dev-perl/Sub-Exporter-Progressive-0.1.13-r1 2024-12-13T23:01:37 >>> dev-perl/Package-Stash-0.400.0 2024-12-13T23:01:38 >>> media-libs/gd-2.3.3-r4 2024-12-13T23:01:39 >>> app-text/ttf2pk2-2.0_p20240311 2024-12-13T23:01:54 >>> dev-perl/Params-ValidationCompiler-0.310.0-r1 2024-12-13T23:01:55 >>> dev-perl/Specio-0.480.0 2024-12-13T23:01:55 >>> dev-perl/B-Hooks-EndOfScope-0.280.0 2024-12-13T23:01:56 >>> dev-perl/Devel-GlobalDestruction-0.140.0-r1 2024-12-13T23:02:08 >>> dev-perl/namespace-clean-0.270.0-r1 2024-12-13T23:02:12 >>> dev-perl/namespace-autoclean-0.310.0 2024-12-13T23:02:16 >>> dev-perl/Log-Dispatch-2.710.0 2024-12-13T23:02:20 >>> app-text/texlive-core-2024-r1 2024-12-13T23:02:29 >>> dev-texlive/texlive-basic-2024_p72890 2024-12-13T23:02:34 >>> dev-texlive/texlive-latex-2024_p71912 2024-12-13T23:02:35 >>> dev-texlive/texlive-fontutils-2024_p61207 2024-12-13T23:02:36 >>> dev-texlive/texlive-fontsrecommended-2024_p54074 2024-12-13T23:03:10 >>> dev-texlive/texlive-latexrecommended-2024_p71527 2024-12-13T23:03:15 >>> virtual/latex-base-1.0 2024-12-13T23:03:18 >>> dev-tex/pgf-3.1.10 2024-12-13T23:03:23 >>> dev-tex/latex-beamer-3.71 ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r3:0 acct-group/cdrom-0-r3:0 acct-group/dialout-0-r3:0 acct-group/disk-0-r3:0 acct-group/floppy-0-r1:0 acct-group/input-0-r3:0 acct-group/kmem-0-r3:0 acct-group/kvm-0-r3:0 acct-group/lp-0-r3:0 acct-group/man-0-r3:0 acct-group/messagebus-0-r3:0 acct-group/polkitd-0-r3:0 acct-group/portage-0-r2:0 acct-group/render-0-r3:0 acct-group/root-0-r2:0 acct-group/sgx-0-r2:0 acct-group/sshd-0-r3:0 acct-group/tape-0-r3:0 acct-group/tty-0-r3:0 acct-group/usb-0-r3:0 acct-group/video-0-r3:0 acct-user/man-1-r3:0 acct-user/messagebus-0-r3:0 acct-user/polkitd-0-r3:0 acct-user/portage-0-r3:0 acct-user/sshd-0-r3:0 app-admin/eselect-1.4.28:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.31-r2:0 -pkgcore app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr app-alternatives/bc-0:0 -gh gnu app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr app-alternatives/cpio-0:0 gnu -libarchive split-usr app-alternatives/gzip-1:0 -pigz reference split-usr app-alternatives/lex-0-r1:0 flex -reflex app-alternatives/ninja-1:0 reference -samurai app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh app-alternatives/tar-0:0 gnu -libarchive split-usr app-alternatives/yacc-1-r2:0 bison -byacc -reference app-arch/bzip2-1.0.8-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static -static-libs verify-sig app-arch/cpio-2.15:0 nls app-arch/gzip-1.13-r1:0 -pic -static verify-sig app-arch/libarchive-3.7.7:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -test verify-sig xattr zstd app-arch/tar-1.35:0 acl -minimal nls -selinux verify-sig xattr app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode app-arch/xz-utils-5.6.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_crc32 -doc extra-filters nls -pgo -static-libs verify-sig app-arch/zstd-1.5.6:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 lzma -static-libs -test zlib app-crypt/gnupg-2.4.7:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket verify-sig -wks-server app-crypt/gpgme-1.24.1:1/11.6.15.2 -common-lisp cxx debug -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -qt5 -qt6 -static-libs -test verify-sig app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs app-crypt/libmd-1.1.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 app-crypt/pinentry-1.3.1:0 -X -caps -efl -emacs -gtk -keyring ncurses -qt5 -qt6 verify-sig -wayland app-crypt/rhash-1.4.5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls ssl -static-libs app-editors/nano-8.2:0 -debug -justify -magic -minimal ncurses nls spell unicode app-eselect/eselect-fontconfig-20220403:0 app-eselect/eselect-iptables-20220320:0 app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 app-eselect/eselect-pinentry-0.7.4:0 app-i18n/man-pages-ja-20180315-r2:0 app-i18n/man-pages-l10n-4.19.0:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_sr l10n_sv l10n_uk l10n_vi app-i18n/man-pages-zh_CN-1.6.4.0:0 app-misc/ca-certificates-20240203.3.98:0 -cacert app-misc/editor-wrapper-4-r1:0 app-misc/mime-types-2.1.54:0 -nginx app-misc/pax-utils-1.3.8:0 -caps -man -python -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 -python_single_target_python3_13 -seccomp -test app-misc/tmux-3.5a:0 debug -jemalloc -selinux -systemd -utempter -vim-syntax app-portage/eix-0.36.9:0 debug -doc nls -sqlite app-portage/elt-patches-20241121:0 app-portage/gemato-20.6:0 gpg -pretty-log python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test -tools app-portage/gentoolkit-0.6.8:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test app-portage/getuto-1.14:0 -test app-portage/portage-utils-0.97:0 openmp qmanifest -static app-shells/bash-5.2_p37:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline verify-sig app-shells/bash-completion-2.15.0:0 eselect -test app-shells/gentoo-bashcomp-20240625:0 app-shells/push-3.4:0 app-shells/quoter-4.2:0 app-shells/tcsh-6.24.13:0 -man nls app-text/ansifilter-2.21:0 -gui verify-sig app-text/asciidoc-10.2.1:0 -python_single_target_pypy3 -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 -python_single_target_python3_13 -test app-text/build-docbook-catalog-2.4:0 app-text/docbook-xml-dtd-4.5-r2:4.5 app-text/docbook-xml-dtd-4.4-r3:4.4 app-text/docbook-xml-dtd-4.3-r2:4.3 app-text/docbook-xml-dtd-4.2-r3:4.2 app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 app-text/docbook-xsl-stylesheets-1.79.1-r4:0 -ruby app-text/dvipsk-2024.03.11_p70015:0 -doc -source app-text/libpaper-2.1.3:0/2 app-text/manpager-1:0 app-text/opensp-1.5.2-r10:0 -doc nls -static-libs -test app-text/po4a-0.73:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test -test app-text/ps2pkm-1.8_p20240311:0 app-text/sgml-common-0.6.3-r7:0 app-text/texlive-core-2024-r1:0 -X -cjk -doc luajittex -source -tk -xetex -xindy app-text/ttf2pk2-2.0_p20240311:0 app-text/xmlto-0.0.28-r11:0 -latex text dev-build/autoconf-2.72-r1:2.72 -emacs verify-sig dev-build/autoconf-archive-2024.10.16-r1:0 dev-build/autoconf-wrapper-20231224:0 dev-build/automake-1.17-r1:1.17 -test verify-sig dev-build/automake-wrapper-20240607:0 dev-build/cmake-3.31.2:0 -dap -doc -gui ncurses -qt6 -test verify-sig dev-build/gtk-doc-am-1.33.2:0 dev-build/libtool-2.5.4:2 -vanilla dev-build/make-4.4.1-r100:0 -doc -guile -guile_single_target_2-2 guile_single_target_3-0 nls -static -test verify-sig dev-build/meson-1.6.0-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 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-selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla sys-libs/libcap-2.71:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam -static-libs -tools sys-libs/libseccomp-2.5.5-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -experimental-loong -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -static-libs -test sys-libs/libxcrypt-4.4.36-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compat -headers-only -static-libs system -test sys-libs/ncurses-6.5_p20241109:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada -cxx debug -doc -gpm -minimal -profile split-usr -split-usr stack-realign -static-libs -test tinfo -trace verify-sig sys-libs/pam-1.6.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -examples filecaps -nis -selinux sys-libs/readline-8.2_p13-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs unicode -utils verify-sig sys-libs/timezone-data-2024a-r1:0 -leaps-timezone nls -zic-slim sys-libs/zlib-1.3.1-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip -static-libs verify-sig sys-process/procps-4.0.4-r2:0/0-ng -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux -skill -static-libs -systemd -test unicode sys-process/psmisc-23.7:0 -X -apparmor nls -selinux -test virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs virtual/dev-manager-0-r2:0 virtual/dist-kernel-6.1.119:0/6.1.119 virtual/editor-0-r7:0 virtual/latex-base-1.0:0 virtual/libc-1-r1:0 virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 virtual/libudev-251-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd virtual/man-0-r4:0 virtual/openssh-0:0 ssl virtual/os-headers-0-r2:0 virtual/package-manager-1:0 virtual/pager-0-r1:0 virtual/perl-Carp-1.540.0-r1:0 virtual/perl-CPAN-2.360.0-r1:0 virtual/perl-CPAN-Meta-2.150.10-r8:0 virtual/perl-CPAN-Meta-Requirements-2.143.0:0 virtual/perl-CPAN-Meta-YAML-0.18.0-r10:0 virtual/perl-Data-Dumper-2.189.0:0 virtual/perl-Encode-3.210.0-r1:0 virtual/perl-Exporter-5.780.0:0 virtual/perl-ExtUtils-CBuilder-0.280.240:0 virtual/perl-ExtUtils-Install-2.220.0-r1:0 virtual/perl-ExtUtils-MakeMaker-7.700.0-r1:0 virtual/perl-ExtUtils-Manifest-1.750.0:0 virtual/perl-ExtUtils-ParseXS-3.510.0-r1:0 virtual/perl-File-Path-2.180.0-r3:0 virtual/perl-File-Spec-3.900.0:0 virtual/perl-File-Temp-0.231.100-r1:0 virtual/perl-Getopt-Long-2.580.0:0 virtual/perl-IO-1.550.0:0 virtual/perl-IPC-Cmd-1.40.0-r4:0 virtual/perl-JSON-PP-4.160.0-r2:0 virtual/perl-libnet-3.150.0-r1:0 ssl virtual/perl-Math-BigInt-2.3.2:0 virtual/perl-MIME-Base64-3.160.100_rc-r1:0 virtual/perl-Module-Metadata-1.0.38:0 virtual/perl-parent-0.241.0-r1:0 virtual/perl-Parse-CPAN-Meta-2.150.10-r8:0 virtual/perl-Perl-OSType-1.10.0-r8:0 virtual/perl-podlators-5.10.200_rc:0 virtual/perl-Scalar-List-Utils-1.680.0:0 virtual/perl-Storable-3.320.0-r1:0 virtual/perl-Sys-Syslog-0.360.0-r4:0 virtual/perl-Test-Harness-3.500.0:0 virtual/perl-Test-Simple-1.302.199:0 virtual/perl-Text-ParseWords-3.310.0-r3:0 virtual/perl-Time-HiRes-1.977.700:0 virtual/perl-Unicode-Collate-1.310.0-r2:0 virtual/perl-version-0.993.0:0 virtual/perl-XSLoader-0.320.0-r1:0 virtual/pkgconfig-3:0 native-symlinks virtual/service-manager-1-r3:0 virtual/ssh-0-r2:0 -minimal virtual/tmpfiles-0-r5:0 -systemd virtual/ttf-fonts-1-r2:0 virtual/udev-217-r7:0 -systemd virtual/w3m-1:0 www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface x11-base/xcb-proto-1.17.0:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 x11-base/xorg-proto-2024.1:0 -test x11-libs/cairo-1.18.2-r1:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test x11-libs/libX11-1.8.10:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libxcb-1.17.0:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb x11-libs/libXdmcp-1.1.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXext-1.3.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXrender-0.9.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 x11-libs/pixman-0.44.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test x11-libs/xtrans-1.5.2:0 -doc x11-misc/compose-tables-1.8.10:0 x11-misc/shared-mime-info-2.4-r1:0 -test x11-misc/xdg-user-dirs-0.18:0 -gtk x11-misc/xdg-utils-1.2.1-r6:0 -X -dbus -doc -gnome -plasma ############# # build.log # ############# >>> Unpacking source... >>> Unpacking wise2.4.0alpha.tar.gz to /var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work >>> Unpacking wise-2.4.0_alpha-patchset.tar.bz2 to /var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha ... * Applying wise-2.4.0_alpha-glibc-2.10.patch ... [ ok ] * Applying wise-2.4.0_alpha-cflags.patch ... [ ok ] * Applying wise-api.tex.patch ... patching file api.tex Hunk #4 succeeded at 5551 with fuzz 1 (offset 496 lines). [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha ... make -j32 -C src all make: Entering directory '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha/src' (cd base ; make CC="x86_64-pc-linux-gnu-gcc" CFLAGS="-O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread `pkg-config glib-2.0 --cflags`" libwisebase.a ) make[1]: Entering directory '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha/src/base' x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wiseconfig.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wisestring.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wiseerror.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wisememman.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wisefile.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wiserandom.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wisetime.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wiseoverlay.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include wisestreaminterface.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include commandline.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include linesubs.c wisefile.dy: In function ‘Wise2_myfclose’: wisefile.dy:72:18: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘FILE *’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 72 | fprintf(stderr,"Closing %d\n",ofp); | ^~~~~~~~~~~~~~ ~~~ | | | FILE * ar ru libwisebase.a wiseconfig.o wisestring.o wiseerror.o wisememman.o wisefile.o wiserandom.o wisetime.o wiseoverlay.o wisestreaminterface.o commandline.o linesubs.o ar: creating libwisebase.a if test -x /bin/ranlib; then /bin/ranlib libwisebase.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libwisebase.a; else exit 0; fi make[1]: Leaving directory '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha/src/base' (cd HMMer2 ; make CC="x86_64-pc-linux-gnu-gcc" CFLAGS="-O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread `pkg-config glib-2.0 --cflags`" libhmmer.a ) make[1]: Entering directory '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha/src/HMMer2' x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c alphabet.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c core_algorithms.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c debug.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c emit.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c emulation.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c histogram.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c hmmio.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c mathsupport.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c masks.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c misc.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c modelmakers.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c plan7.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c plan9.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c prior.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c tophits.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c trace.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c aligneval.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c alignio.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c cluster.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c dayhoff.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c file.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c getopt.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c gnuregex.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c interleaved.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c iupac.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c msf.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c revcomp.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c selex.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c sqerror.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c sqio.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c sre_ctype.c x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c sre_math.c gnuregex.c: In function ‘re_set_syntax’: gnuregex.c:795:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 795 | re_set_syntax (syntax) | ^~~~~~~~~~~~~ gnuregex.c: In function ‘regex_compile’: gnuregex.c:1049:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 1049 | regex_compile (pattern, size, syntax, bufp) | ^~~~~~~~~~~~~ gnuregex.c:1175:20: error: too many arguments to function ‘at_begline_loc_p’ 1175 | || at_begline_loc_p (pattern, p, syntax)) | ^~~~~~~~~~~~~~~~ gnuregex.c:831:16: note: declared here 831 | static boolean at_begline_loc_p (), at_endline_loc_p (); | ^~~~~~~~~~~~~~~~ gnuregex.c:1190:20: error: too many arguments to function ‘at_endline_loc_p’ 1190 | || at_endline_loc_p (p, pend, syntax)) | ^~~~~~~~~~~~~~~~ gnuregex.c:831:37: note: declared here 831 | static boolean at_begline_loc_p (), at_endline_loc_p (); | ^~~~~~~~~~~~~~~~ gnuregex.c:903:3: error: too many arguments to function ‘store_op1’ 903 | store_op1 (op, loc, (to) - (loc) - 3) | ^~~~~~~~~ gnuregex.c:1296:21: note: in expansion of macro ‘STORE_JUMP’ 1296 | STORE_JUMP (jump, b, laststart); | ^~~~~~~~~~ gnuregex.c:829:13: note: declared here 829 | static void store_op1 (), store_op2 (); | ^~~~~~~~~ gnuregex.c:903:3: error: too many arguments to function ‘store_op1’ 903 | store_op1 (op, loc, (to) - (loc) - 3) | ^~~~~~~~~ gnuregex.c:1301:19: note: in expansion of macro ‘STORE_JUMP’ 1301 | STORE_JUMP (maybe_pop_jump, b, laststart - 3); | ^~~~~~~~~~ gnuregex.c:829:13: note: declared here 829 | static void store_op1 (), store_op2 (); | ^~~~~~~~~ gnuregex.c:911:3: error: too many arguments to function ‘insert_op1’ 911 | insert_op1 (op, loc, (to) - (loc) - 3, b) | ^~~~~~~~~~ gnuregex.c:1310:13: note: in expansion of macro ‘INSERT_JUMP’ 1310 | INSERT_JUMP (keep_string_p ? on_failure_keep_string_jump | ^~~~~~~~~~~ gnuregex.c:830:13: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ gnuregex.c:911:3: error: too many arguments to function ‘insert_op1’ 911 | insert_op1 (op, loc, (to) - (loc) - 3, b) | ^~~~~~~~~~ gnuregex.c:1324:17: note: in expansion of macro ‘INSERT_JUMP’ 1324 | INSERT_JUMP (dummy_failure_jump, laststart, laststart + 6); | ^~~~~~~~~~~ gnuregex.c:830:13: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ prior.c: In function ‘P7ReadPrior’: prior.c:102:12: warning: implicit declaration of function ‘strcmp’ [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 102 | if (strcmp(sptr, "DIRICHLET") == 0) pri->strategy = PRI_DCHLET; | ^~~~~~ prior.c:10:1: note: include ‘’ or provide a declaration of ‘strcmp’ 9 | #include "funcs.h" +++ |+#include 10 | #include "squid.h" gnuregex.c:1407:25: error: too many arguments to function ‘compile_range’ 1407 | = compile_range (&p, pend, translate, syntax, b); | ^~~~~~~~~~~~~ gnuregex.c:833:22: note: declared here 833 | static reg_errcode_t compile_range (); | ^~~~~~~~~~~~~ gnuregex.c:1418:27: error: too many arguments to function ‘compile_range’ 1418 | ret = compile_range (&p, pend, translate, syntax, b); | ^~~~~~~~~~~~~ gnuregex.c:833:22: note: declared here 833 | static reg_errcode_t compile_range (); | ^~~~~~~~~~~~~ gnuregex.c:903:3: error: too many arguments to function ‘store_op1’ 903 | store_op1 (op, loc, (to) - (loc) - 3) | ^~~~~~~~~ gnuregex.c:1629:19: note: in expansion of macro ‘STORE_JUMP’ 1629 | STORE_JUMP (jump_past_alt, fixup_alt_jump, b - 1); | ^~~~~~~~~~ gnuregex.c:829:13: note: declared here 829 | static void store_op1 (), store_op2 (); | ^~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c sre_string.c gnuregex.c:911:3: error: too many arguments to function ‘insert_op1’ 911 | insert_op1 (op, loc, (to) - (loc) - 3, b) | ^~~~~~~~~~ gnuregex.c:1686:15: note: in expansion of macro ‘INSERT_JUMP’ 1686 | INSERT_JUMP (on_failure_jump, begalt, b + 6); | ^~~~~~~~~~~ gnuregex.c:830:13: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ gnuregex.c:903:3: error: too many arguments to function ‘store_op1’ 903 | store_op1 (op, loc, (to) - (loc) - 3) | ^~~~~~~~~ gnuregex.c:1707:17: note: in expansion of macro ‘STORE_JUMP’ 1707 | STORE_JUMP (jump_past_alt, fixup_alt_jump, b); | ^~~~~~~~~~ gnuregex.c:829:13: note: declared here 829 | static void store_op1 (), store_op2 (); | ^~~~~~~~~ gnuregex.c:911:3: error: too many arguments to function ‘insert_op1’ 911 | insert_op1 (op, loc, (to) - (loc) - 3, b) | ^~~~~~~~~~ gnuregex.c:1801:22: note: in expansion of macro ‘INSERT_JUMP’ 1801 | INSERT_JUMP (jump, laststart, b + 3); | ^~~~~~~~~~~ gnuregex.c:830:13: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ gnuregex.c:915:3: error: too many arguments to function ‘insert_op2’ 915 | insert_op2 (op, loc, (to) - (loc) - 3, arg, b) | ^~~~~~~~~~ gnuregex.c:1826:22: note: in expansion of macro ‘INSERT_JUMP2’ 1826 | INSERT_JUMP2 (succeed_n, laststart, | ^~~~~~~~~~~~ gnuregex.c:830:28: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ gnuregex.c:1835:22: error: too many arguments to function ‘insert_op2’ 1835 | insert_op2 (set_number_at, laststart, 5, lower_bound, b); | ^~~~~~~~~~ gnuregex.c:830:28: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ gnuregex.c:907:3: error: too many arguments to function ‘store_op2’ 907 | store_op2 (op, loc, (to) - (loc) - 3, arg) | ^~~~~~~~~ gnuregex.c:1846:26: note: in expansion of macro ‘STORE_JUMP2’ 1846 | STORE_JUMP2 (jump_n, b, laststart + 5, | ^~~~~~~~~~~ gnuregex.c:829:27: note: declared here 829 | static void store_op1 (), store_op2 (); | ^~~~~~~~~ gnuregex.c:1864:26: error: too many arguments to function ‘insert_op2’ 1864 | insert_op2 (set_number_at, laststart, b - laststart, | ^~~~~~~~~~ gnuregex.c:830:28: note: declared here 830 | static void insert_op1 (), insert_op2 (); | ^~~~~~~~~~ gnuregex.c:1958:19: error: too many arguments to function ‘group_in_compile_stack’ 1958 | if (group_in_compile_stack (compile_stack, c1)) | ^~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:832:16: note: declared here 832 | static boolean group_in_compile_stack (); | ^~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:903:3: error: too many arguments to function ‘store_op1’ 903 | store_op1 (op, loc, (to) - (loc) - 3) | ^~~~~~~~~ gnuregex.c:2024:5: note: in expansion of macro ‘STORE_JUMP’ 2024 | STORE_JUMP (jump_past_alt, fixup_alt_jump, b); | ^~~~~~~~~~ gnuregex.c:829:13: note: declared here 829 | static void store_op1 (), store_op2 (); | ^~~~~~~~~ gnuregex.c: In function ‘store_op1’: gnuregex.c:2050:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2050 | store_op1 (op, loc, arg) | ^~~~~~~~~ gnuregex.c: In function ‘store_op2’: gnuregex.c:2063:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2063 | store_op2 (op, loc, arg1, arg2) | ^~~~~~~~~ gnuregex.c: In function ‘insert_op1’: gnuregex.c:2078:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2078 | insert_op1 (op, loc, arg, end) | ^~~~~~~~~~ gnuregex.c:2090:3: error: too many arguments to function ‘store_op1’ 2090 | store_op1 (op, loc, arg); | ^~~~~~~~~ gnuregex.c:2050:1: note: declared here 2050 | store_op1 (op, loc, arg) | ^~~~~~~~~ gnuregex.c: In function ‘insert_op2’: gnuregex.c:2097:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2097 | insert_op2 (op, loc, arg1, arg2, end) | ^~~~~~~~~~ gnuregex.c:2109:3: error: too many arguments to function ‘store_op2’ 2109 | store_op2 (op, loc, arg1, arg2); | ^~~~~~~~~ gnuregex.c:2063:1: note: declared here 2063 | store_op2 (op, loc, arg1, arg2) | ^~~~~~~~~ gnuregex.c: In function ‘at_begline_loc_p’: gnuregex.c:2118:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2118 | at_begline_loc_p (pattern, p, syntax) | ^~~~~~~~~~~~~~~~ gnuregex.c: In function ‘at_endline_loc_p’: gnuregex.c:2137:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2137 | at_endline_loc_p (p, pend, syntax) | ^~~~~~~~~~~~~~~~ gnuregex.c: In function ‘group_in_compile_stack’: gnuregex.c:2159:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2159 | group_in_compile_stack (compile_stack, regnum) | ^~~~~~~~~~~~~~~~~~~~~~ gnuregex.c: In function ‘compile_range’: gnuregex.c:2187:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2187 | compile_range (p_ptr, pend, translate, syntax, b) | ^~~~~~~~~~~~~ gnuregex.c: In function ‘re_compile_fastmap’: gnuregex.c:2519:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2519 | re_compile_fastmap (bufp) | ^~~~~~~~~~~~~~~~~~ gnuregex.c: In function ‘re_set_registers’: gnuregex.c:2804:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2804 | re_set_registers (bufp, regs, num_regs, starts, ends) | ^~~~~~~~~~~~~~~~ gnuregex.c: In function ‘re_search’: gnuregex.c:2831:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2831 | re_search (bufp, string, size, startpos, range, regs) | ^~~~~~~~~ gnuregex.c: In function ‘re_search_2’: gnuregex.c:2864:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 2864 | re_search_2 (bufp, string1, size1, string2, size2, startpos, range, regs, stop) | ^~~~~~~~~~~ gnuregex.c: In function ‘re_match’: gnuregex.c:3123:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 3123 | re_match (bufp, string, size, pos, regs) | ^~~~~~~~ gnuregex.c: In function ‘re_match_2’: gnuregex.c:3148:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 3148 | re_match_2 (bufp, string1, size1, string2, size2, pos, regs, stop) | ^~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c stack.c gnuregex.c:3604:17: error: too many arguments to function ‘group_match_null_string_p’ 3604 | = group_match_null_string_p (&p1, pend, reg_info); | ^~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:2984:16: note: declared here 2984 | group_match_null_string_p (); | ^~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:3752:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-pointer-to-int-cast]] 3752 | if ((int) old_regend[r] >= (int) regstart[r]) | ^ gnuregex.c:3752:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-pointer-to-int-cast]] 3752 | if ((int) old_regend[r] >= (int) regstart[r]) | ^ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:3758:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3758 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2397 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:3758:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3758 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c translate.c gnuregex.c:3822:23: error: too many arguments to function ‘bcmp_translate’ 3822 | ? bcmp_translate (d, d2, mcnt, translate) | ^~~~~~~~~~~~~~ gnuregex.c:2981:12: note: declared here 2981 | static int bcmp_translate (); | ^~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:3905:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3905 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2397 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:3905:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3905 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:3958:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3958 | PUSH_FAILURE_POINT (p + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2397 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:3958:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3958 | PUSH_FAILURE_POINT (p + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2482:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-pointer-to-int-cast]] 2482 | high_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^ gnuregex.c:4064:13: note: in expansion of macro ‘POP_FAILURE_POINT’ 4064 | POP_FAILURE_POINT (sdummy, pdummy, | ^~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c types.c gnuregex.c:2485:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-pointer-to-int-cast]] 2485 | low_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^ gnuregex.c:4064:13: note: in expansion of macro ‘POP_FAILURE_POINT’ 4064 | POP_FAILURE_POINT (sdummy, pdummy, | ^~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -fpermissive -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fpermissive -c -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -c weight.c gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:4097:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4097 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2397 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:4097:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4097 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:4110:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4110 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]] 2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^ gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’ 2397 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~ gnuregex.c:4110:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4110 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ gnuregex.c:2482:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-pointer-to-int-cast]] 2482 | high_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^ gnuregex.c:4278:11: note: in expansion of macro ‘POP_FAILURE_POINT’ 4278 | POP_FAILURE_POINT (d, p, | ^~~~~~~~~~~~~~~~~ gnuregex.c:2485:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-pointer-to-int-cast]] 2485 | low_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^ gnuregex.c:4278:11: note: in expansion of macro ‘POP_FAILURE_POINT’ 4278 | POP_FAILURE_POINT (d, p, | ^~~~~~~~~~~~~~~~~ gnuregex.c: In function ‘group_match_null_string_p’: gnuregex.c:4344:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4344 | group_match_null_string_p (p, end, reg_info) | ^~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:4394:24: error: too many arguments to function ‘alt_match_null_string_p’ 4394 | if (!alt_match_null_string_p (p1, p1 + mcnt - 3, | ^~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:2982:16: note: declared here 2982 | static boolean alt_match_null_string_p (), | ^~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:4424:20: error: too many arguments to function ‘alt_match_null_string_p’ 4424 | if (!alt_match_null_string_p (p1, p1 + mcnt, reg_info)) | ^~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:2982:16: note: declared here 2982 | static boolean alt_match_null_string_p (), | ^~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:4439:16: error: too many arguments to function ‘common_op_match_null_string_p’ 4439 | if (!common_op_match_null_string_p (&p1, end, reg_info)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:2983:16: note: declared here 2983 | common_op_match_null_string_p (), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c: In function ‘alt_match_null_string_p’: gnuregex.c:4453:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4453 | alt_match_null_string_p (p, end, reg_info) | ^~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:4475:16: error: too many arguments to function ‘common_op_match_null_string_p’ 4475 | if (!common_op_match_null_string_p (&p1, end, reg_info)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:2983:16: note: declared here 2983 | common_op_match_null_string_p (), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c: In function ‘common_op_match_null_string_p’: gnuregex.c:4490:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4490 | common_op_match_null_string_p (p, end, reg_info) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:4520:13: error: too many arguments to function ‘group_match_null_string_p’ 4520 | ret = group_match_null_string_p (&p1, end, reg_info); | ^~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c:4344:1: note: declared here 4344 | group_match_null_string_p (p, end, reg_info) | ^~~~~~~~~~~~~~~~~~~~~~~~~ gnuregex.c: In function ‘bcmp_translate’: gnuregex.c:4578:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4578 | bcmp_translate (s1, s2, len, translate) | ^~~~~~~~~~~~~~ gnuregex.c: In function ‘regcomp’: gnuregex.c:4720:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4720 | regcomp (preg, pattern, cflags) | ^~~~~~~ gnuregex.c: In function ‘regexec’: gnuregex.c:4795:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4795 | regexec (preg, string, nmatch, pmatch, eflags) | ^~~~~~~ gnuregex.c: In function ‘regerror’: gnuregex.c:4860:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4860 | regerror (errcode, preg, errbuf, errbuf_size) | ^~~~~~~~ gnuregex.c: In function ‘regfree’: gnuregex.c:4904:1: warning: old-style function definition [-Wold-style-definition[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-old-style-definition]] 4904 | regfree (preg) | ^~~~~~~ cluster.c: In function ‘Cluster’: cluster.c:178:26: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Walloc-size-larger-than_003d]] 178 | (diff = (float *) malloc ((N-1) * sizeof(float))) == NULL) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from squid.h:22, from cluster.c:122: /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc[https://gcc.gnu.org/onlinedocs/gcc/Common-Function-Attributes.html#index-malloc-function-attribute]’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ make[1]: *** [Makefile:69: gnuregex.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make[1]: Leaving directory '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha/src/HMMer2' make: *** [makefile:81: realall] Error 2 make: Leaving directory '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha/src' * ERROR: sci-biology/wise-2.4.0_alpha-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/wise-2.4.0_alpha-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/wise-2.4.0_alpha-r1::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-biology/wise-2.4.0_alpha-r1:20241213-220327.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha' * S: '/var/tmp/portage/sci-biology/wise-2.4.0_alpha-r1/work/wise2.4.0alpha'